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» The Inference Based on Molecular Computing
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RTA
2010
Springer
15 years 3 months ago
Declarative Debugging of Missing Answers for Maude
Abstract. Declarative debugging is a semi-automatic technique that starts from an incorrect computation and locates a program fragment responsible for the error by building a tree ...
Adrián Riesco, Alberto Verdejo, Narciso Mar...
RECOMB
2003
Springer
16 years 23 hour ago
Haplotype reconstruction from SNP alignment
In this paper, we describe a method for statistical reconstruction of haplotypes from a set of aligned SNP fragments. We consider the case of a pair of homologous human chromosome...
Lei Li, Jong Hyun Kim, Michael S. Waterman
SODA
2003
ACM
142views Algorithms» more  SODA 2003»
15 years 1 months ago
The similarity metric
—A new class of distances appropriate for measuring similarity relations between sequences, say one type of similarity per distance, is studied. We propose a new “normalized in...
Ming Li, Xin Chen, Xin Li, Bin Ma, Paul M. B. Vit&...
RECOMB
2008
Springer
16 years 1 days ago
Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
Cuong Than, Guohua Jin, Luay Nakhleh
RECOMB
2006
Springer
16 years 1 days ago
Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes
Abstract. Transcriptional interactions in a cell are modulated by a variety of mechanisms that prevent their representation as pure pairwise interactions between a transcription fa...
Kai Wang, Ilya Nemenman, Nilanjana Banerjee, Adam ...