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BMCBI
2004
323views more  BMCBI 2004»
13 years 6 months ago
Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks
Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...
David Adalsteinsson, David McMillen, Timothy C. El...
LICS
2010
IEEE
13 years 4 months ago
Abstracting the Differential Semantics of Rule-Based Models: Exact and Automated Model Reduction
ing the differential semantics of rule-based models: exact and automated model reduction (Invited Lecture) Vincent Danos∗§, J´erˆome Feret†, Walter Fontana‡, Russell Harme...
Vincent Danos, Jérôme Feret, Walter F...
TCSB
2008
13 years 6 months ago
Robustness to Code and Data Deletion in Autocatalytic Quines
Abstract. Software systems nowadays are becoming increasingly complex and vulnerable to all sorts of failures and attacks. There is a rising need for robust self-repairing systems ...
Thomas Meyer, Daniel Schreckling, Christian F. Tsc...
BIOSYSTEMS
2008
65views more  BIOSYSTEMS 2008»
13 years 6 months ago
The origin of autonomous agents by natural selection
We propose conditions in which an autonomous agent could arise, and increase in complexity. It is assumed that on the primitive Earth there arose a recycling flow-reactor containi...
Chrisantha Fernando, Jon Rowe
CONCUR
2007
Springer
14 years 13 days ago
Rule-Based Modelling of Cellular Signalling
Abstract. Modelling is becoming a necessity in studying biological signalling pathways, because the combinatorial complexity of such systems rapidly overwhelms intuitive and qualit...
Vincent Danos, Jérôme Feret, Walter F...