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BMCBI
2006
137views more  BMCBI 2006»
14 years 10 months ago
Sigma: multiple alignment of weakly-conserved non-coding DNA sequence
Background: Existing tools for multiple-sequence alignment focus on aligning protein sequence or protein-coding DNA sequence, and are often based on extensions to Needleman-Wunsch...
Rahul Siddharthan
BMCBI
2006
192views more  BMCBI 2006»
14 years 10 months ago
Analysis of circular genome rearrangement by fusions, fissions and block-interchanges
Background: Analysis of genomes evolving via block-interchange events leads to a combinatorial problem of sorting by block-interchanges, which has been studied recently to evaluat...
Chin Lung Lu, Yen-Lin Huang, Tsui Ching Wang, Hsie...
BMCBI
2006
100views more  BMCBI 2006»
14 years 10 months ago
Using the nucleotide substitution rate matrix to detect horizontal gene transfer
Background: Horizontal gene transfer (HGT) has allowed bacteria to evolve many new capabilities. Because transferred genes perform many medically important functions, such as conf...
Micah Hamady, M. D. Betterton, Rob Knight
JACM
2006
93views more  JACM 2006»
14 years 9 months ago
Combining expert advice in reactive environments
"Experts algorithms" constitute a methodology for choosing actions repeatedly, when the rewards depend both on the choice of action and on the unknown current state of t...
Daniela Pucci de Farias, Nimrod Megiddo
IJCV
2007
363views more  IJCV 2007»
14 years 9 months ago
Image Analysis and Reconstruction using a Wavelet Transform Constructed from a Reducible Representation of the Euclidean Motion
Abstract. Inspired by the early visual system of many mammalians we consider the construction of-and reconstruction from- an orientation score Uf : R2 ×S1 → C as a local orienta...
Remco Duits, Michael Felsberg, Gösta H. Granl...