The probability theory is a well-studied branch of mathematics, in order to carry out formal reasoning about probability. Thus, it is important to have a logic, both for computati...
Background: One of the most challenging aspects of protein-protein docking is the inclusion of flexibility into the docking procedure. We developed a postfilter where the grid-rep...
Background: Docking algorithms are developed to predict in which orientation two proteins are likely to bind under natural conditions. The currently used methods usually consist o...
Background: The multitude of motif detection algorithms developed to date have largely focused on the detection of patterns in primary sequence. Since sequence-dependent DNA struc...
This paper investigates optimization techniques and data structures exploiting the use of so-called pseudo models. These techniques are applied to speed up TBox and ABox reasoning ...