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» The Logical Structure of Binding
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IJCNN
2006
IEEE
15 years 3 months ago
Comparing Kernels for Predicting Protein Binding Sites from Amino Acid Sequence
— The ability to identify protein binding sites and to detect specific amino acid residues that contribute to the specificity and affinity of protein interactions has importan...
Feihong Wu
CEC
2008
IEEE
14 years 10 months ago
Regulation of gene regulation - smooth binding with dynamic affinity affects evolvability
Abstract-- Understanding the evolvability of simple differentiating multicellular systems is a fundamental problem in the biology of genetic regulatory networks and in computationa...
Johannes F. Knabe, Chrystopher L. Nehaniv, Maria J...
FMOODS
2003
14 years 11 months ago
A Syntax-Directed Hoare Logic for Object-Oriented Programming Concepts
This paper outlines a sound and complete Hoare logic for a sequential object-oriented language with inheritance and subtyping like Java. It describes a weakest precondition calculu...
Cees Pierik, Frank S. de Boer
VMCAI
2010
Springer
15 years 7 months ago
Shape Analysis in the Absence of Pointers and Structure
Shape analyses (Chase et al. 1990, Sagiv et al. 2002) discover properties of dynamic and/or mutable structures. We ask, "Is there an equivalent to shape analysis for purely fu...
Matthew Might
BMCBI
2010
167views more  BMCBI 2010»
14 years 9 months ago
Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies
Background: Knowledge of transcription factor-DNA binding patterns is crucial for understanding gene transcription. Numerous DNA-binding proteins are annotated as transcription fa...
Denitsa Alamanova, Philip Stegmaier, Alexander E. ...