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BMCBI
2007
121views more  BMCBI 2007»
14 years 9 months ago
Predicting zinc binding at the proteome level
Background: Metalloproteins are proteins capable of binding one or more metal ions, which may be required for their biological function, for regulation of their activities or for ...
Andrea Passerini, Claudia Andreini, Sauro Menchett...
86
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BMCBI
2005
122views more  BMCBI 2005»
14 years 9 months ago
Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein
Background: Recognition codes for protein-DNA interactions typically assume that the interacting positions contribute additively to the binding energy. While this is known to not ...
Jiajian Liu, Gary D. Stormo
RECOMB
2006
Springer
15 years 10 months ago
Evolution of Tandemly Repeated Sequences Through Duplication and Inversion
Abstract. Given a phylogenetic tree T for a family of tandemly repeated genes and their signed order O on the chromosome, we aim to find the minimum number of inversions compatible...
Denis Bertrand, Mathieu Lajoie, Nadia El-Mabrouk, ...
SAT
2010
Springer
174views Hardware» more  SAT 2010»
14 years 8 months ago
A System for Solving Constraint Satisfaction Problems with SMT
Abstract. SAT Modulo Theories (SMT) consists of deciding the satisfiability of a formula with respect to a decidable background theory, such as linear integer arithmetic, bit-vect...
Miquel Bofill, Josep Suy, Mateu Villaret
RECOMB
2005
Springer
15 years 10 months ago
Predicting Transcription Factor Binding Sites Using Structural Knowledge
Abstract. Current approaches for identification and detection of transcription factor binding sites rely on an extensive set of known target genes. Here we describe a novel structu...
Tommy Kaplan, Nir Friedman, Hanah Margalit