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» The Motif Tracking Algorithm
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BMCBI
2006
144views more  BMCBI 2006»
14 years 9 months ago
More robust detection of motifs in coexpressed genes by using phylogenetic information
Background: Several motif detection algorithms have been developed to discover overrepresented motifs in sets of coexpressed genes. However, in a noisy gene list, the number of ge...
Pieter Monsieurs, Gert Thijs, Abeer A. Fadda, Sigr...
MFCS
2007
Springer
15 years 3 months ago
Structural Analysis of Gapped Motifs of a String
Abstract. We investigate the structure of the set of gapped motifs (repeated patterns with don’t cares) of a given string of symbols. A natural equivalence classification is int...
Esko Ukkonen
IJDMB
2006
90views more  IJDMB 2006»
14 years 9 months ago
An efficient motif discovery algorithm with unknown motif length and number of binding sites
: Most motif discovery algorithms from DNA sequences require the motif's length as input. Styczynski et al. introduced the Extended (l,d)-Motif Problem (EMP) where the motif&#...
Henry C. M. Leung, Francis Y. L. Chin
SAC
2004
ACM
15 years 3 months ago
Guiding motif discovery by iterative pattern refinement
In this paper, we demonstrate that the performance of a motif discovery algorithm can be significantly improved by embedding it into a novel framework that effectively guides the ...
Zhiping Wang, Mehmet M. Dalkilic, Sun Kim