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    AE
    2005
    Springer
    103views Artificial Intelligence» more  AE 2005»
    Incorporating Knowledge of Secondary Structures in a L-System-Based Encoding for Protein Folding
    15 years 3 months ago
    Incorporating Knowledge of Secondary Structures in a L-System-Based Encoding for Protein Folding
    Download  www.ldc.usb.ve
    An encoding scheme for protein folding on lattice models, inspired by parametric L-systems, was proposed. The encoding incorporates problem domain knowledge in the form of predesig...
    Gabriela Ochoa, Gabi Escuela, Natalio Krasnogor
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    SDM
    2008
    SIAM
    112views Data Mining» more  SDM 2008»
    A pattern mining approach toward discovering generalized sequence signatures
    14 years 11 months ago
    A pattern mining approach toward discovering generalized sequence signatures
    Download  making.csie.ndhu.edu.tw
    Typically, sequence signatures, such as motifs and domains, are assumed to be localized in one region of a sequence or are derived as combinations of the former. We generalize the...
    Dietmar H. Dorr, Anne Denton
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    ISMB
    2000
    85views Computational Biology» more  ISMB 2000»
    A Statistical Method for Finding Transcription Factor Binding Sites
    14 years 11 months ago
    A Statistical Method for Finding Transcription Factor Binding Sites
    Download  www.aaai.org
    Understanding the mechanismsthat determine the regulation of geneexpression is an important and challenging problem. A fundamental subproblem is to identify DNA-bindingsites for u...
    Saurabh Sinha, Martin Tompa
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    JCB
    2008
    75views more  JCB 2008»
    New, Improved, and Practical k-Stem Sequence Similarity Measures for Probe Design
    14 years 10 months ago
    New, Improved, and Practical k-Stem Sequence Similarity Measures for Probe Design
    Download  algorithmics.molgen.mpg.de
    We define new measures of sequence similarity for oligonucleotide probe design. These new measures incorporate the nearest neighbor k-stem motifs in their definition, but can be e...
    Anthony J. Macula, Alexander Schliep, Morgan A. Bi...
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    NAR
    2006
    107views more  NAR 2006»
    CorGen - measuring and generating long-range correlations for DNA sequence analysis
    14 years 9 months ago
    CorGen - measuring and generating long-range correlations for DNA sequence analysis
    Download  evogen.molgen.mpg.de
    CorGen is a web server that measures long-range correlations in the base composition of DNA and generates random sequences with the same correlation parameters. Long-range correla...
    Philipp W. Messer, Peter F. Arndt
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