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» The ParTriCluster Algorithm for Gene Expression Analysis
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EDBT
2011
ACM
199views Database» more  EDBT 2011»
14 years 1 months ago
Finding closed frequent item sets by intersecting transactions
Most known frequent item set mining algorithms work by enumerating candidate item sets and pruning infrequent candidates. An alternative method, which works by intersecting transa...
Christian Borgelt, Xiaoyuan Yang, Rubén Nog...
RECOMB
2004
Springer
15 years 9 months ago
Modeling and Analysis of Heterogeneous Regulation in Biological Networks
Abstract. In this study we propose a novel model for the representation of biological networks and provide algorithms for learning model parameters from experimental data. Our appr...
Irit Gat-Viks, Amos Tanay, Ron Shamir
BMCBI
2007
96views more  BMCBI 2007»
14 years 9 months ago
Structure and function predictions of the Msa protein in Staphylococcus aureus
Background: Staphylococcus aureus is a human pathogen that causes a wide variety of lifethreatening infections using a large number of virulence factors. One of the major global r...
Vijayaraj Nagarajan, Mohamed O. Elasri
BMCBI
2008
169views more  BMCBI 2008»
14 years 9 months ago
CompMoby: Comparative MobyDick for detection of cis-regulatory motifs
Background: The regulation of gene expression is complex and occurs at many levels, including transcriptional and post-transcriptional, in metazoans. Transcriptional regulation is...
Christina Chaivorapol, Collin Melton, Grace Wei, R...
BMCBI
2005
94views more  BMCBI 2005»
14 years 9 months ago
YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities
Background: A number of algorithms for steady state analysis of metabolic networks have been developed over the years. Of these, Elementary Mode Analysis (EMA) has proven especial...
Roland Schwarz, Patrick Musch, Axel von Kamp, Bern...