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CPM
1994
Springer
97views Combinatorics» more  CPM 1994»
15 years 4 months ago
The Parameterized Complexity of Sequence Alignment and Consensus
Hans L. Bodlaender, Rodney G. Downey, Michael R. F...
CJ
2008
90views more  CJ 2008»
15 years 14 days ago
Parameterized Complexity and Biopolymer Sequence Comparison
The article surveys parameterized algorithms and complexities for computational tasks on biopolymer sequences, including the problems of longest common subsequence, shortest commo...
Liming Cai, Xiuzhen Huang, Chunmei Liu, Frances A....
85
Voted
RECOMB
2009
Springer
16 years 1 months ago
Simultaneous Alignment and Folding of Protein Sequences
Abstract. Accurate comparative analysis tools for low-homology proteins remains a difficult challenge in computational biology, especially sequence alignment and consensus folding ...
Bonnie Berger, Charles W. O'Donnell, Jér&oc...
BMCBI
2008
109views more  BMCBI 2008»
15 years 15 days ago
ConStruct: Improved construction of RNA consensus structures
Background: Aligning homologous non-coding RNAs (ncRNAs) correctly in terms of sequence and structure is an unresolved problem, due to both mathematical complexity and imperfect s...
Andreas Wilm, Kornelia Linnenbrink, Gerhard Steger
107
Voted
BMCBI
2007
153views more  BMCBI 2007»
15 years 15 days ago
Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction?
Background: In ribonucleic acid (RNA) molecules whose function depends on their final, folded three-dimensional shape (such as those in ribosomes or spliceosome complexes), the se...
Amelia B. Bellamy-Royds, Marcel Turcotte