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» The Path-Packing Structure of Graphs
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SPIRE
2005
Springer
15 years 6 months ago
A Multiple Graph Layers Model with Application to RNA Secondary Structures Comparison
Abstract. We introduce a new data structure, called MiGaL for “Multiple Graph Layers”, that is composed of various graphs linked together ions of abstraction/refinement. The n...
Julien Allali, Marie-France Sagot
PRICAI
2004
Springer
15 years 6 months ago
Creative 3D Designs Using Interactive Genetic Algorithm with Structured Directed Graph
We propose a methodology for representing artificial creatures like 3D flowers. Directed graph and Lindenmayer system (L-system) are commonly involved in AI-based creativity resear...
Hyeun-Jeong Min, Sung-Bae Cho
GPEM
2006
82views more  GPEM 2006»
15 years 19 days ago
Shortcomings with using edge encodings to represent graph structures
There are various representations for encoding graph structures, such as artificial neural networks (ANNs) and circuits, each with its own strengths and weaknesses. Here we analyz...
Gregory Hornby
102
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RECOMB
2004
Springer
16 years 28 days ago
Mining protein family specific residue packing patterns from protein structure graphs
Finding recurring residue packing patterns, or spatial motifs, that characterize protein structural families is an important problem in bioinformatics. To this end, we apply a nov...
Jun Huan, Wei Wang 0010, Deepak Bandyopadhyay, Jac...
BMCBI
2008
116views more  BMCBI 2008»
15 years 22 days ago
A novel representation of RNA secondary structure based on element-contact graphs
Background: Depending on their specific structures, noncoding RNAs (ncRNAs) play important roles in many biological processes. Interest in developing new topological indices based...
Wenjie Shu, Xiaochen Bo, Zhiqiang Zheng, Shengqi W...