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AIPS
2011
14 years 5 months ago
Where Ignoring Delete Lists Works, Part II: Causal Graphs
The ignoring delete lists relaxation is of paramount importance for both satisficing and optimal planning. In earlier work (Hoffmann 2005), it was observed that the optimal relax...
Joerg Hoffmann
141
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BMCBI
2011
14 years 5 months ago
Clustering gene expression data with a penalized graph-based metric
Background: The search for cluster structure in microarray datasets is a base problem for the so-called “-omic sciences”. A difficult problem in clustering is how to handle da...
Ariel E. Bayá, Pablo M. Granitto
BMCBI
2011
14 years 5 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
BMCBI
2011
14 years 5 months ago
NeurphologyJ: an automatic neuronal morphology quantification method and its application in pharmacological discovery
Background: Automatic quantification of neuronal morphology from images of fluorescence microscopy plays an increasingly important role in high-content screenings. However, there ...
Shinn-Ying Ho, Chih-Yuan Chao, Hui-Ling Huang, Tza...
CGF
2011
14 years 5 months ago
Visual Exploration of Time-Series Data with Shape Space Projections
Time-series data is a common target for visual analytics, as they appear in a wide range of application domains. Typical tasks in analyzing time-series data include identifying cy...
Matthew O. Ward, Zhenyu Guo
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