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» The Promise of Research on Open Source Software
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BMCBI
2010
164views more  BMCBI 2010»
14 years 9 months ago
Flexible network reconstruction from relational databases with Cytoscape and CytoSQL
Background: Molecular interaction networks can be efficiently studied using network visualization software such as Cytoscape. The relevant nodes, edges and their attributes can be...
Kris Laukens, Jens Hollunder, Thanh Hai Dang, Geer...
SIGSOFT
2007
ACM
15 years 10 months ago
Context-based detection of clone-related bugs
Studies show that programs contain much similar code, commonly known as clones. One of the main reasons for introducing clones is programmers' tendency to copy and paste code...
Lingxiao Jiang, Zhendong Su, Edwin Chiu
WCRE
2005
IEEE
15 years 3 months ago
When Functions Change Their Names: Automatic Detection of Origin Relationships
It is a common understanding that identifying the same entity such as module, file, and function between revisions is important for software evolution related analysis. Most softw...
Sunghun Kim, Kai Pan, E. James Whitehead Jr.
BMCBI
2010
98views more  BMCBI 2010»
14 years 9 months ago
miRMaid: a unified programming interface for microRNA data resources
Background: MicroRNAs (miRNAs) are endogenous small RNAs that play a key role in post-transcriptional regulation of gene expression in animals and plants. The number of known miRN...
Anders Jacobsen, Anders Krogh, Sakari Kauppinen, M...
BMCBI
2007
172views more  BMCBI 2007»
14 years 9 months ago
msBayes: Pipeline for testing comparative phylogeographic histories using hierarchical approximate Bayesian computation
Background: Although testing for simultaneous divergence (vicariance) across different population-pairs that span the same barrier to gene flow is of central importance to evoluti...
Michael J. Hickerson, Eli Stahl, Naoki Takebayashi