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» The Protein Data Bank and lessons in data management
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BMCBI
2010
109views more  BMCBI 2010»
15 years 1 months ago
Structural alphabets derived from attractors in conformational space
Background: The hierarchical and partially redundant nature of protein structures justifies the definition of frequently occurring conformations of short fragments as `states'...
Alessandro Pandini, Arianna Fornili, Jens Kleinjun...
118
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BMCBI
2005
131views more  BMCBI 2005»
15 years 1 months ago
Functional annotation by identification of local surface similarities: a novel tool for structural genomics
Background: Protein function is often dependent on subsets of solvent-exposed residues that may exist in a similar three-dimensional configuration in non homologous proteins thus ...
Fabrizio Ferrè, Gabriele Ausiello, Andreas ...
BMCBI
2006
172views more  BMCBI 2006»
15 years 1 months ago
BioWarehouse: a bioinformatics database warehouse toolkit
Background: This article addresses the problem of interoperation of heterogeneous bioinformatics databases. Results: We introduce BioWarehouse, an open source toolkit for construc...
Thomas J. Lee, Yannick Pouliot, Valerie Wagner, Pr...
ESEM
2008
ACM
15 years 3 months ago
Some lessons learned in conducting software engineering surveys in china
Component-Based Software Engineering (CBSE) with Open Source Software and Commercial-Off-the-Shelf (COTS) components, Open Source Software (OSS) based development, and Software Ou...
Junzhong Ji, Jingyue Li, Reidar Conradi, Chunnian ...
BMCBI
2008
114views more  BMCBI 2008»
15 years 1 months ago
Indel PDB: A database of structural insertions and deletions derived from sequence alignments of closely related proteins
Background: Insertions and deletions (indels) represent a common type of sequence variations, which are less studied and pose many important biological questions. Recent research ...
Michael Hsing, Artem Cherkasov