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» The Protein Data Bank and lessons in data management
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PVLDB
2008
134views more  PVLDB 2008»
14 years 9 months ago
Evita raced: metacompilation for declarative networks
Declarative languages have recently been proposed for many new applications outside of traditional data management. Since these are relatively early research efforts, it is import...
Tyson Condie, David Chu, Joseph M. Hellerstein, Pe...
NAR
2006
188views more  NAR 2006»
14 years 9 months ago
BiologicalNetworks: visualization and analysis tool for systems biology
Systemslevelinvestigationofgenomicscaleinformation requires the development of truly integrated databases dealing with heterogeneous data, which can be queried for simple properti...
Michael Baitaluk, Mayya Sedova, Animesh Ray, Amarn...
SIGMOD
2006
ACM
122views Database» more  SIGMOD 2006»
15 years 9 months ago
MonetDB/XQuery: a fast XQuery processor powered by a relational engine
Relational XQuery systems try to re-use mature relational data management infrastructures to create fast and scalable XML database technology. This paper describes the main featur...
Peter A. Boncz, Torsten Grust, Maurice van Keulen,...
BMCBI
2006
123views more  BMCBI 2006»
14 years 9 months ago
SBEAMS-Microarray: database software supporting genomic expression analyses for systems biology
Background: The biological information in genomic expression data can be understood, and computationally extracted, in the context of systems of interacting molecules. The automat...
Bruz Marzolf, Eric W. Deutsch, Patrick Moss, David...
BMCBI
2005
179views more  BMCBI 2005»
14 years 9 months ago
MARS: Microarray analysis, retrieval, and storage system
Background: Microarray analysis has become a widely used technique for the study of geneexpression patterns on a genomic scale. As more and more laboratories are adopting microarr...
Michael Maurer, Robert Molidor, Alexander Sturn, J...