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» The Protein Data Bank and lessons in data management
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ANCS
2009
ACM
14 years 7 months ago
Design and performance analysis of a DRAM-based statistics counter array architecture
The problem of maintaining efficiently a large number (say millions) of statistics counters that need to be updated at very high speeds (e.g. 40 Gb/s) has received considerable re...
Haiquan (Chuck) Zhao, Hao Wang, Bill Lin, Jun (Jim...
KDD
2005
ACM
104views Data Mining» more  KDD 2005»
15 years 9 months ago
Mining tree queries in a graph
We present an algorithm for mining tree-shaped patterns in a large graph. Novel about our class of patterns is that they can contain constants, and can contain existential nodes w...
Bart Goethals, Eveline Hoekx, Jan Van den Bussche
ICDM
2005
IEEE
188views Data Mining» more  ICDM 2005»
15 years 3 months ago
Hierarchy-Regularized Latent Semantic Indexing
Organizing textual documents into a hierarchical taxonomy is a common practice in knowledge management. Beside textual features, the hierarchical structure of directories reflect...
Yi Huang, Kai Yu, Matthias Schubert, Shipeng Yu, V...
NAR
2011
225views Computer Vision» more  NAR 2011»
14 years 8 days ago
PHOSIDA 2011: the posttranslational modification database
The primary purpose of PHOSIDA (http://www .phosida.com) is to manage posttranslational modification sites of various species ranging from bacteria to human. Since its last report...
Florian Gnad, Jeremy Gunawardena, Matthias Mann 00...
BMCBI
2010
167views more  BMCBI 2010»
14 years 9 months ago
BisoGenet: a new tool for gene network building, visualization and analysis
Background: The increasing availability and diversity of omics data in the post-genomic era offers new perspectives in most areas of biomedical research. Graph-based biological ne...
Alexander Martin, Maria Elena Ochagavia, Laya C. R...