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TCBB
2010
112views more  TCBB 2010»
14 years 7 months ago
A Study of Hierarchical and Flat Classification of Proteins
Automatic classification of proteins using machine learning is an important problem that has received significant attention in the literature. One feature of this problem is that e...
Arthur Zimek, Fabian Buchwald, Eibe Frank, Stefan ...
IHI
2012
370views Healthcare» more  IHI 2012»
13 years 8 months ago
FUSE: a system for data-driven multi-level functional summarization of protein interaction networks
Despite recent progress in high-throughput experimental studies, systems level visualization and analysis of large protein interaction networks (ppi) remains a challenging task, g...
Boon-Siew Seah, Sourav S. Bhowmick, Charles Forbes...
79
Voted
PLDI
2010
ACM
15 years 5 months ago
Bamboo: a data-centric, object-oriented approach to many-core software
Traditional data-oriented programming languages such as dataflow s and stream languages provide a natural abstraction for parallel programming. In these languages, a developer fo...
Jin Zhou, Brian Demsky
BMCBI
2010
83views more  BMCBI 2010»
15 years 25 days ago
Trees on networks: resolving statistical patterns of phylogenetic similarities among interacting proteins
Background: Phylogenies capture the evolutionary ancestry linking extant species. Correlations and similarities among a set of species are mediated by and need to be understood in...
William P. Kelly, Michael P. H. Stumpf
76
Voted
BIOCOMP
2006
15 years 2 months ago
Evidence for Functional Protein Fragment Homology in Viral Genome Types
In this paper evidence is presented that supports the hypothesis that amino acid usage bias is a fundamental property of viral genome types. Clues to the biological basis for the o...
John Rose, Rishi Mukhopadhyay