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DEXA
2007
Springer
150views Database» more  DEXA 2007»
15 years 4 months ago
Sequence Alignment as a Database Technology Challenge
Abstract. Sequence alignment is an important task for molecular biologists. Because alignment basically deals with approximate string matching on large biological sequence collecti...
Hans Philippi
CSB
2005
IEEE
125views Bioinformatics» more  CSB 2005»
15 years 4 months ago
Peptide Charge State Determination for Low-Resolution Tandem Mass Spectra
Mass spectrometry is a particularly useful technology for the rapid and robust identification of peptides and proteins in complex mixtures. Peptide sequences can be identified b...
Aaron A. Klammer, Christine C. Wu, Michael J. MacC...
EVOW
2009
Springer
15 years 2 months ago
A Hierarchical Classification Ant Colony Algorithm for Predicting Gene Ontology Terms
Abstract. This paper proposes a novel Ant Colony Optimisation algorithm for the hierarchical problem of predicting protein functions using the Gene Ontology (GO). The GO structure ...
Fernando E. B. Otero, Alex Alves Freitas, Colin G....
ACMSE
2005
ACM
15 years 18 days ago
An algorithm for baseline correction of MALDI mass spectra
Visualization and differentiation of proteins in tissue are problems of increasing interest in computational systems biology, bioinformatics, and image processing. A platform for ...
Betsy Williams, Shannon Cornett, Benoit M. Dawant,...
NIPS
2008
15 years 1 days ago
Scalable Algorithms for String Kernels with Inexact Matching
We present a new family of linear time algorithms based on sufficient statistics for string comparison with mismatches under the string kernels framework. Our algorithms improve t...
Pavel P. Kuksa, Pai-Hsi Huang, Vladimir Pavlovic