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136
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BIBM
2009
IEEE
151views Bioinformatics» more  BIBM 2009»
15 years 7 months ago
Detection of Gene Orthology Based on Protein-Protein Interaction Networks
Abstract—Ortholog detection methods present a powerful approach for finding genes that participate in similar biological processes across different organisms, extending our unde...
Fadi Towfic, M. Heather West Greenlee, Vasant Hona...
127
Voted
TCBB
2010
163views more  TCBB 2010»
14 years 7 months ago
Classification of Protein-Protein Interaction Full-Text Documents Using Text and Citation Network Features
Abstract--We participated (as Team 9) in the Article Classification Task of the Biocreative II.5 Challenge: binary classification of fulltext documents relevant for protein-protein...
Artemy Kolchinsky, Alaa Abi-Haidar, Jasleen Kaur, ...
96
Voted
NAACL
2007
15 years 1 months ago
Can Semantic Roles Generalize Across Genres?
PropBank has been widely used as training data for Semantic Role Labeling. However, because this training data is taken from the WSJ, the resulting machine learning models tend to...
Szu-ting Yi, Edward Loper, Martha Palmer
89
Voted
BMCBI
2010
102views more  BMCBI 2010»
15 years 19 days ago
SAMPLEX: Automatic mapping of perturbed and unperturbed regions of proteins and complexes
Background: The activity of proteins within the cell is characterized by their motions, flexibility, interactions or even the particularly intriguing case of partially unfolded st...
Mickaël Krzeminski, Karine Loth, Rolf Boelens...
135
Voted
TCBB
2011
14 years 7 months ago
A Partial Set Covering Model for Protein Mixture Identification Using Mass Spectrometry Data
—Protein identification is a key and essential step in mass spectrometry (MS) based proteome research. To date, there are many protein identification strategies that employ eithe...
Zengyou He, Can Yang, Weichuan Yu