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SDM
2011
SIAM
307views Data Mining» more  SDM 2011»
14 years 3 months ago
Block-LDA: Jointly modeling entity-annotated text and entity-entity links
We present a model that improves entity entity link modeling in a mixed membership stochastic block model, by jointly modeling links with text about the entities that are linked i...
Ramnath Balasubramanyan, William W. Cohen
122
Voted
BIBM
2008
IEEE
125views Bioinformatics» more  BIBM 2008»
15 years 24 days ago
Systems Biology via Redescription and Ontologies (III): Protein Classification Using Malaria Parasite's Temporal Transcriptomic
This paper addresses the protein classification problem, and explores how its accuracy can be improved by using information from time-course gene expression data. The methods are ...
Antonina Mitrofanova, Samantha Kleinberg, Jane Car...
102
Voted
RECOMB
2009
Springer
16 years 1 months ago
An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations
Collective behavior involving distally separate regions in a protein is known to widely affect its function. In this paper, we present an online approach to study and characterize ...
Arvind Ramanathan, Pratul K. Agarwal, Maria Kurnik...
BMCBI
2006
114views more  BMCBI 2006»
15 years 20 days ago
Evaluation and comparison of mammalian subcellular localization prediction methods
Background: Determination of the subcellular location of a protein is essential to understanding its biochemical function. This information can provide insight into the function o...
Josefine Sprenger, J. Lynn Fink, Rohan D. Teasdale
143
Voted
IEEEPACT
2002
IEEE
15 years 5 months ago
A Framework for Parallelizing Load/Stores on Embedded Processors
Many modern embedded processors (esp. DSPs) support partitioned memory banks (also called X-Y memory or dual bank memory) along with parallel load/store instructions to achieve co...
Xiaotong Zhuang, Santosh Pande, John S. Greenland ...