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BMCBI
2010
96views more  BMCBI 2010»
14 years 10 months ago
The Protein-DNA Interface database
The Protein-DNA Interface database (PDIdb) is a repository containing relevant structural information of Protein-DNA complexes solved by X-ray crystallography and available at the...
Tomás Norambuena, Francisco Melo
NAR
2011
196views Computer Vision» more  NAR 2011»
14 years 18 days ago
UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DN
The Universal PBM Resource for OligonucleotideBinding Evaluation (UniPROBE) database is a centralized repository of information on the DNAbinding preferences of proteins as determ...
Kimberly Robasky, Martha L. Bulyk
BMCBI
2010
83views more  BMCBI 2010»
14 years 10 months ago
An effective approach for generating a three-Cys2His2 zinc-finger-DNA complex model by docking
Background: Determination of protein-DNA complex structures with both NMR and X-ray crystallography remains challenging in many cases. High Ambiguity-Driven DOCKing (HADDOCK) is a...
Chun-Chi Chou, M. Rajasekaran, Chinpan Chen
BMCBI
2010
128views more  BMCBI 2010»
14 years 10 months ago
Conserved residue clusters at protein-protein interfaces and their use in binding site identification
Background: Biological evolution conserves protein residues that are important for structure and function. Both protein stability and function often require a certain degree of st...
Mainak Guharoy, Pinak Chakrabarti