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COCOON
2007
Springer
15 years 5 months ago
Seed-Based Exclusion Method for Non-coding RNA Gene Search
Given an RNA family characterized by conserved sequences and folding constraints, the problem is to search for all the instances of the RNA family in a genomic database. As seed-ba...
Jean-Eudes Duchesne, Mathieu Giraud, Nadia El-Mabr...
NAR
2002
84views more  NAR 2002»
14 years 11 months ago
SCOR: a Structural Classification of RNA database
The Structural Classification of RNA (SCOR) database provides a survey of the three-dimensional motifs contained in 259 NMR and X-ray RNA structures. In one classification, the st...
Peter S. Klosterman, Makio Tamura, Stephen R. Holb...
NAR
2000
182views more  NAR 2000»
14 years 11 months ago
tmRDB (tmRNA database)
Maintained at the University of Texas Health Science Center at Tyler, Texas, the tmRNA database (tmRDB) is accessible at the URL http://psyche.uthct.edu/dbs/ tmRDB/tmRDB.html with...
Christian Zwieb, Jacek Wower
SSDBM
2007
IEEE
131views Database» more  SSDBM 2007»
15 years 6 months ago
Mining RNA Tertiary Motifs with Structure Graphs
We present a novel application of graph database mining to identify tertiary motifs in RNA structures. In od, we abstract an RNA molecule as a labeled graph and use a frequent sub...
Xueyi Wang, Jun Huan, Jack Snoeyink, Wei Wang 0010
NAR
2000
65views more  NAR 2000»
14 years 11 months ago
PLMItRNA, a database for tRNAs and tRNA genes in plant mitochondria: enlargement and updating
The current version of PLMItRNA has been realized to constitute a database for tRNA molecules and genes identified in the mitochondria of all green plants (Viridiplantae). It is t...
Vito Volpetti, Raffaele Gallerani, Caterina De Ben...