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RECOMB
2001
Springer
16 years 3 months ago
Applications of generalized pair hidden Markov models to alignment and gene finding problems
Hidden Markov models (HMMs) have been successfully applied to a variety of problems in molecular biology, ranging from alignment problems to gene nding and annotation. Alignment p...
Lior Pachter, Marina Alexandersson, Simon Cawley
ESA
2007
Springer
97views Algorithms» more  ESA 2007»
15 years 9 months ago
To Fill or Not to Fill: The Gas Station Problem
In this paper we study several routing problems that generalize shortest paths and the Traveling Salesman Problem. We consider a more general model that incorporates the actual co...
Samir Khuller, Azarakhsh Malekian, Julián M...
WADS
2005
Springer
114views Algorithms» more  WADS 2005»
15 years 8 months ago
The Multi-radius Cover Problem
An instance of the multi-radius cover problem consists of a graph G = (V, E) with edge lengths l : E → R+ . Each vertex u ∈ V represents a transmission station for which a tra...
Refael Hassin, Danny Segev
EURODAC
1994
IEEE
186views VHDL» more  EURODAC 1994»
15 years 7 months ago
Algorithms for a switch module routing problem
We consider a switch module routing problem for symmetric array FPGAs. The work is motivated by two applications. The rst is that of eciently evaluating switch module designs [8]...
Shashidhar Thakur, D. F. Wong, S. Muthukrishnan
156
Voted
PEPM
1995
ACM
15 years 7 months ago
Shape Analysis as a Generalized Path Problem
This paper concerns a method for approximating the possible “shapes” that heap-allocated structures in a program can take on. We present a new approach to finding solutions t...
Thomas W. Reps