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BMCBI
2010
143views more  BMCBI 2010»
15 years 2 days ago
Learning gene regulatory networks from only positive and unlabeled data
Background: Recently, supervised learning methods have been exploited to reconstruct gene regulatory networks from gene expression data. The reconstruction of a network is modeled...
Luigi Cerulo, Charles Elkan, Michele Ceccarelli
BMCBI
2006
95views more  BMCBI 2006»
15 years 35 min ago
XcisClique: analysis of regulatory bicliques
Background: Modeling of cis-elements or regulatory motifs in promoter (upstream) regions of genes is a challenging computational problem. In this work, set of regulatory motifs si...
Amrita Pati, Cecilia Vasquez-Robinet, Lenwood S. H...
ICPPW
2005
IEEE
15 years 5 months ago
Gene Ordering in Microarray Data Using Parallel Memetic Algorithms
This paper addresses the Microarray Gene Ordering problem. It consists in ordering a set of genes, grouping together the ones with similar behavior. This behavior can be measured ...
Alexandre Mendes, Carlos Cotta, Vinícius Ga...
CSB
2004
IEEE
136views Bioinformatics» more  CSB 2004»
15 years 3 months ago
AZuRE, a Scalable System for Automated Term Disambiguation of Gene and Protein Names
Researchers, hindered by a lack of standard gene and protein-naming conventions, endure long, sometimes fruitless, literature searches. A system is described which is able to auto...
Raf M. Podowski, John G. Cleary, Nicholas T. Gonch...
NAR
2002
132views more  NAR 2002»
14 years 11 months ago
euGenes: a eukaryote genome information system
euGenes is a genome information system and database that provides a common summary of eukaryote genes and genomes, at web site http://iubio.bio.indiana.edu/eugenes/. Seven popular...
Donald G. Gilbert