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CP
2003
Springer
15 years 10 months ago
A SAT-Based Approach to Multiple Sequence Alignment
Multiple sequence alignment is a central problem in Bioinformatics. A known integer programming approach is to apply branch-and-cut to exponentially large graph-theoretic models. T...
Steven David Prestwich, Desmond G. Higgins, Orla O...
INFOCOM
2002
IEEE
15 years 10 months ago
Towards Simple, High-performance Schedulers for High-aggregate Bandwidth Switches
— High-aggregate bandwidth switches are those whose port count multiplied by the operating line rate is very high; for example, a 30 port switch operating at 40 Gbps or a 1000 po...
Paolo Giaccone, Balaji Prabhakar, Devavrat Shah
182
Voted
SWAT
1992
Springer
147views Algorithms» more  SWAT 1992»
15 years 9 months ago
Efficient Rebalancing of Chromatic Search Trees
In PODS'91, Nurmi and Soisalon-Soininen presented a new type of binary search tree for databases, which they call a chromatic tree. The aim is to improve runtime performance ...
Joan Boyar, Kim S. Larsen
CPM
2005
Springer
100views Combinatorics» more  CPM 2005»
15 years 7 months ago
Hardness of Optimal Spaced Seed Design
Abstract. Speeding up approximate pattern matching is a line of research in stringology since the 80’s. Practically fast approaches belong to the class of filtration algorithms,...
François Nicolas, Eric Rivals
BMCBI
2010
90views more  BMCBI 2010»
15 years 5 months ago
Local alignment of generalized k-base encoded DNA sequence
Background: DNA sequence comparison is a well-studied problem, in which two DNA sequences are compared using a weighted edit distance. Recent DNA sequencing technologies however o...
Nils Homer, Stanley F. Nelson, Barry Merriman