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» The approximability of the String Barcoding problem
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CAV
2001
Springer
83views Hardware» more  CAV 2001»
13 years 10 months ago
Iterating Transducers
Regular languages have proved useful for the symbolic state exploration of infinite state systems. They can be used to represent infinite sets of system configurations; the tran...
Dennis Dams, Yassine Lakhnech, Martin Steffen
STOC
2000
ACM
156views Algorithms» more  STOC 2000»
13 years 10 months ago
Near optimal multiple alignment within a band in polynomial time
Multiple sequence alignment is a fundamental problem in computational biology. Because of its notorious difficulties, aligning sequences within a constant band (c-diagonal) is a ...
Ming Li, Bin Ma, Lusheng Wang
WOB
2004
120views Bioinformatics» more  WOB 2004»
13 years 7 months ago
Reconfigurable Systems for Sequence Alignment and for General Dynamic Programming
ABSTRACT. Reconfigurable systolic arrays can be adapted to efficiently resolve a wide spectrum of computational problems; parallelism is naturally explored in systolic arrays and r...
Ricardo P. Jacobi, Mauricio Ayala-Rincón, L...
ALT
2006
Springer
14 years 3 months ago
Learning Linearly Separable Languages
This paper presents a novel paradigm for learning languages that consists of mapping strings to an appropriate high-dimensional feature space and learning a separating hyperplane i...
Leonid Kontorovich, Corinna Cortes, Mehryar Mohri
CIKM
2008
Springer
13 years 8 months ago
TinyLex: static n-gram index pruning with perfect recall
Inverted indexes using sequences of characters (n-grams) as terms provide an error-resilient and language-independent way to query for arbitrary substrings and perform approximate...
Derrick Coetzee