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VAMOS
2008
Springer
15 years 6 months ago
Model-Based Implementation of Meta-Variability Constructs: A Case Study using Aspects
In this paper, we introduce the concept of metavariability, i.e., variability with respect to basic variability attributes like binding time or constraints. While the main focus o...
Klaus Schmid, Holger Eichelberger
APBC
2004
122views Bioinformatics» more  APBC 2004»
15 years 6 months ago
Evolution of Relative Synonymous Codon Usage in Human Immunodeficiency Virus Type 1
Mutation in HIV-1 is extremely rapid, a consequence of a low-fidelity viral reverse transcription process. The envelope gene has been shown to accumulate substitutions at a rate o...
Peter L. Meintjes, Allen G. Rodrigo
BMCBI
2006
86views more  BMCBI 2006»
15 years 5 months ago
MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution
Background: Non-coding DNA sequences comprise a very large proportion of the total genomic content of mammals, most other vertebrates, many invertebrates, and most plants. Unravel...
Jun Wang, Peter D. Keightley, Toby Johnson
INFOCOM
2011
IEEE
14 years 8 months ago
Optimal control of epidemic evolution
—Epidemic models based on nonlinear differential equations have been extensively applied in a variety of systems as diverse as infectious outbreaks, marketing, diffusion of belie...
M. H. R. Khouzani, Saswati Sarkar, Eitan Altman
BMCBI
2011
14 years 12 months ago
PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
Background: The Monte Carlo simulation of sequence evolution is routinely used to assess the performance of phylogenetic inference methods and sequence alignment algorithms. Progr...
Botond Sipos, Tim Massingham, Gregory E. Jordan, N...