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» The complexity of stochastic sequences
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175
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BIOCOMP
2007
15 years 7 months ago
Quality-Based Similarity Search for Biological Sequence Databases
Low-Complexity Regions (LCRs) of biological sequences are the main source of false positives in similarity searches for biological sequence databases. We consider the problem of ...
Xuehui Li, Tamer Kahveci
VISUALIZATION
1995
IEEE
15 years 9 months ago
Visualization of Biological Sequence Similarity Search Results
Biological sequence similarity analysis presents visualization challenges, primarily because of the massive amounts of discrete, multi-dimensional data. Genomic data generated by ...
Ed Huai-hsin Chi, Phillip Barry, Elizabeth Shoop, ...
145
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ICML
2006
IEEE
16 years 7 months ago
Efficient inference on sequence segmentation models
Sequence segmentation is a flexible and highly accurate mechanism for modeling several applications. Inference on segmentation models involves dynamic programming computations tha...
Sunita Sarawagi
BIBE
2007
IEEE
150views Bioinformatics» more  BIBE 2007»
16 years 15 days ago
Differential Scoring for Systolic Sequence Alignment
Systolic implementations of dynamic programming solutions that utilize a similarity matrix can achieve appreciable performance with both course- and fine-grain parallelization. A ...
Antonio E. de la Serna
ACG
2003
Springer
15 years 11 months ago
New Games Related to Old and New Sequences
We define an infinite class of 2-pile subtraction games, where the amount that can be subtracted from both piles simultaneously, is a function f of the size of the piles. Wytho...
Aviezri S. Fraenkel