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» The complexity of stochastic sequences
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163
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ARC
2007
Springer
123views Hardware» more  ARC 2007»
15 years 10 months ago
Multiple Sequence Alignment Using Reconfigurable Computing
The alignment of multiple protein (or DNA) sequences is a current problem in Bioinformatics. ClustalW is the most popular heuristic algorithm for multiple sequence alignment. Pairw...
Carlos R. Erig Lima, Heitor S. Lopes, Maiko R. Mor...
169
Voted
BIOCOMP
2008
15 years 7 months ago
Bioinformatics Tools: Searching for Markers in DNA/RNA Sequences
Research in bioinformatics and computational biology relies heavily on algorithms that facilitate the understanding of biological processes through the application of statistical ...
Kuha Mahalingam, Omar Bagasra
PSB
2004
15 years 7 months ago
Motif Discovery in Heterogeneous Sequence Data
This paper introduces the first integrated algorithm designed to discover novel motifs in heterogeneous sequence data, which is comprised of coregulated genes from a single genome...
Amol Prakash, Mathieu Blanchette, Saurabh Sinha, M...
ATVA
2010
Springer
128views Hardware» more  ATVA 2010»
15 years 7 months ago
What's Decidable about Sequences?
Abstract. We present a first-order theory of (finite) sequences with integer elements, Presburger arithmetic, and regularity constraints, which can model significant properties of ...
Carlo A. Furia
150
Voted
AML
1999
86views more  AML 1999»
15 years 5 months ago
Subrecursive functions on partial sequences
The paper studies a domain theoretical notion of primitive recursion over partial sequences in the context of Scott domains. Based on a non-monotone coding of partial sequences, t...
Karl-Heinz Niggl