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» The effect of sequence quality on sequence alignment
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BMCBI
2005
87views more  BMCBI 2005»
15 years 3 months ago
ProfNet, a method to derive profile-profile alignment scoring functions that improves the alignments of distantly related protei
Background: Profile-profile methods have been used for some years now to detect and align homologous proteins. The best such methods use information from the background distributi...
Tomas Ohlson, Arne Elofsson
GCB
2003
Springer
105views Biometrics» more  GCB 2003»
15 years 8 months ago
In silico prediction of UTR repeats using clustered EST data
Clustering of EST data is a method for the non-redundant representation of an organisms transcriptome. During clustering of large amounts of EST data, usually some large clusters ...
Stefan A. Rensing, Daniel Lang, Ralf Reski
163
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BMCBI
2011
14 years 7 months ago
HomPPI: A Class of Sequence Homology Based Protein-Protein Interface Prediction Methods
Background: Although homology-based methods are among the most widely used methods for predicting the structure and function of proteins, the question as to whether interface sequ...
Li C. Xue, Drena Dobbs, Vasant Honavar
JCB
2008
52views more  JCB 2008»
15 years 3 months ago
Spectrum-Based De Novo Repeat Detection in Genomic Sequences
A novel approach to the detection of genomic repeats is presented in this paper. The technique, dubbed SAGRI (Spectrum Assisted Genomic Repeat Identifier), is based on the spectru...
Huy Hoang Do, Kwok Pui Choi, Franco P. Preparata, ...
CVPR
2006
IEEE
16 years 5 months ago
A General Framework and New Alignment Criterion for Dense Optical Flow
The problem of dense optical flow computation is addressed from a variational viewpoint. A new geometric framework is introduced. It unifies previous art and yields new efficient ...
Rami Ben-Ari, Nir A. Sochen