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BCB
2010
156views Bioinformatics» more  BCB 2010»
14 years 4 months ago
RepFrag: a graph based method for finding repeats and transposons from fragmented genomes
Growing sequencing and assembly efforts have been met by the advances in high throughput machines. However, the presence of massive amounts of repeats and transposons complicates ...
Nirmalya Bandyopadhyay, A. Mark Settles, Tamer Kah...
IADIS
2008
14 years 11 months ago
Dagma: Mining Directed Acyclic Graphs
We present how to efficiently mine a set of directed acyclic graphs (DAGs) for unconnected, both multi- or single-rooted, and induced fragments. With a new canonical form that is ...
T. Werth, A. Dreweke, Marc Wörlein, Ingrid Fi...
MST
2006
104views more  MST 2006»
14 years 9 months ago
Sequencing from Compomers: The Puzzle
The board game FragmindTM poses the following problem: The player has to reconstruct an (unknown) string s over the alphabet . To this end, the game reports the following informati...
Sebastian Böcker
BICOB
2009
Springer
15 years 4 months ago
Assembly of Large Genomes from Paired Short Reads
The de novo assembly of genomes from high-throughput short reads is an active area of research. Several promising methods have been recently developed, with applicability mainly re...
Benjamin G. Jackson, Patrick S. Schnable, Srinivas...
RECOMB
2004
Springer
15 years 10 months ago
A random graph approach to NMR sequential assignment
Nuclear magnetic resonance (NMR) spectroscopy allows scientists to study protein structure, dynamics and interactions in solution. A necessary first step for such applications is ...
Chris Bailey-Kellogg, Sheetal Chainraj, Gopal Pand...