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» The many forms of hypercomputation
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BMCBI
2005
100views more  BMCBI 2005»
14 years 11 months ago
Evolutionary models for insertions and deletions in a probabilistic modeling framework
Background: Probabilistic models for sequence comparison (such as hidden Markov models and pair hidden Markov models for proteins and mRNAs, or their context-free grammar counterp...
Elena Rivas
80
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BMCBI
2005
97views more  BMCBI 2005»
14 years 11 months ago
Comparative mapping of sequence-based and structure-based protein domains
Background: Protein domains have long been an ill-defined concept in biology. They are generally described as autonomous folding units with evolutionary and functional independenc...
Ya Zhang, John-Marc Chandonia, Chris H. Q. Ding, S...
BMCBI
2005
155views more  BMCBI 2005»
14 years 11 months ago
Mining protein function from text using term-based support vector machines
Background: Text mining has spurred huge interest in the domain of biology. The goal of the BioCreAtIvE exercise was to evaluate the performance of current text mining systems. We...
Simon B. Rice, Goran Nenadic, Benjamin J. Stapley
BMCBI
2005
134views more  BMCBI 2005»
14 years 11 months ago
Inherited disorder phenotypes: controlled annotation and statistical analysis for knowledge mining from gene lists
Background: Analysis of inherited diseases and their associated phenotypes is of great importance to gain knowledge of underlying genetic interactions and could ultimately give cl...
Marco Masseroli, Osvaldo Galati, Mauro Manzotti, K...
TOCS
2008
154views more  TOCS 2008»
14 years 11 months ago
Adaptive work-stealing with parallelism feedback
We present an adaptive work-stealing thread scheduler, ASTEAL, for fork-join multithreaded jobs, like those written using the Cilk multithreaded language or the Hood work-stealing...
Kunal Agrawal, Charles E. Leiserson, Yuxiong He, W...