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COCOA
2007
Springer
15 years 10 months ago
A New Dynamic Programming Algorithm for Multiple Sequence Alignment
Abstract. Multiple sequence alignment (MSA) is one of the most basic and central tasks for many studies in modern biology. In this paper, we present a new progressive alignment alg...
Jean-Michel Richer, Vincent Derrien, Jin-Kao Hao
129
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IPPS
2006
IEEE
15 years 10 months ago
FPGA based architecture for DNA sequence comparison and database search
DNA sequence comparison is a computationally intensive problem, known widely since the competition for human DNA decryption. Database search for DNA sequence comparison is of grea...
Euripides Sotiriades, Christos Kozanitis, Apostolo...
SPIRE
2005
Springer
15 years 9 months ago
Experimental Analysis of a Fast Intersection Algorithm for Sorted Sequences
Abstract. This work presents an experimental comparison of intersection algorithms for sorted sequences, including the recent algorithm of Baeza-Yates. This algorithm performs on a...
Ricardo A. Baeza-Yates, Alejandro Salinger
JCB
2000
105views more  JCB 2000»
15 years 3 months ago
A Greedy Algorithm for Aligning DNA Sequences
For aligning DNA sequences that differ only by sequencing errors, or by equivalent errors from other sources, a greedy algorithm can be much faster than traditional dynamic progra...
Zheng Zhang 0004, Scott Schwartz, Lukas Wagner, We...
NAR
2000
123views more  NAR 2000»
15 years 3 months ago
Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences
The AMmtDB database (http://bio-www.ba.cnr.it:8000/ srs6/ ) has been updated by collecting the multi-aligned sequences of Chordata mitochondrial genes coding for proteins and tRNA...
Cecilia Lanave, Sabino Liuni, Flavio Licciulli, Ma...