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BMCBI
2007
130views more  BMCBI 2007»
15 years 4 months ago
HMM-ModE - Improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying e
Background: Profile Hidden Markov Models (HMM) are statistical representations of protein families derived from patterns of sequence conservation in multiple alignments and have b...
Prashant K. Srivastava, Dhwani K. Desai, Soumyadee...
BMCBI
2006
130views more  BMCBI 2006»
15 years 4 months ago
4SALE - A tool for synchronous RNA sequence and secondary structure alignment and editing
Background: In sequence analysis the multiple alignment builds the fundament of all proceeding analyses. Errors in an alignment could strongly influence all succeeding analyses an...
Philipp N. Seibel, Tobias Müller, Thomas Dand...
ICDE
2003
IEEE
247views Database» more  ICDE 2003»
16 years 5 months ago
CLUSEQ: Efficient and Effective Sequence Clustering
Analyzing sequence data has become increasingly important recently in the area of biological sequences, text documents, web access logs, etc. In this paper, we investigate the pro...
Jiong Yang, Wei Wang 0010
ICDE
2005
IEEE
131views Database» more  ICDE 2005»
16 years 5 months ago
On the Sequencing of Tree Structures for XML Indexing
Sequence-based XML indexing aims at avoiding expensive join operations in query processing. It transforms structured XML data into sequences so that a structured query can be answ...
Haixun Wang, Xiaofeng Meng
BMCBI
2010
118views more  BMCBI 2010»
15 years 4 months ago
Towards realistic benchmarks for multiple alignments of non-coding sequences
Background: With the continued development of new computational tools for multiple sequence alignment, it is necessary today to develop benchmarks that aid the selection of the mo...
Jaebum Kim, Saurabh Sinha