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BMCBI
2007
142views more  BMCBI 2007»
15 years 4 months ago
Predicting and improving the protein sequence alignment quality by support vector regression
Background: For successful protein structure prediction by comparative modeling, in addition to identifying a good template protein with known structure, obtaining an accurate seq...
Minho Lee, Chan-seok Jeong, Dongsup Kim
RECOMB
2008
Springer
16 years 4 months ago
Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
Cuong Than, Guohua Jin, Luay Nakhleh
CLUSTER
2003
IEEE
15 years 9 months ago
A Case Study of Parallel I/O for Biological Sequence Search on Linux Clusters
In this paper we analyze the I/O access patterns of a widely-used biological sequence search tool and implement two variations that employ parallel-I/O for data access based on PV...
Yifeng Zhu, Hong Jiang, Xiao Qin, David R. Swanson
ECMDAFA
2010
Springer
228views Hardware» more  ECMDAFA 2010»
15 years 7 months ago
Example-Based Sequence Diagrams to Colored Petri Nets Transformation Using Heuristic Search
Dynamic UML models like sequence diagrams (SD) lack sufficient formal semantics, making it difficult to build automated tools for their analysis, simulation and validation. A commo...
Marouane Kessentini, Arbi Bouchoucha, Houari A. Sa...
CORR
2000
Springer
144views Education» more  CORR 2000»
15 years 4 months ago
Sequence-Based Abstract Interpretation of Prolog
-BASED ABSTRACT INTERPRETATION OF PROLOG1 BAUDOUIN LE CHARLIER, SABINA ROSSI, AND PASCAL VAN HENTENRYCK . Abstract interpretation is a general methodology for systematic developmen...
Baudouin Le Charlier, Sabina Rossi, Pascal Van Hen...