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BMCBI
2008
116views more  BMCBI 2008»
15 years 5 months ago
GBParsy: A GenBank flatfile parser library with high speed
Background: GenBank flatfile (GBF) format is one of the most popular sequence file formats because of its detailed sequence features and ease of readability. To use the data in th...
Tae-Ho Lee, Yeon-Ki Kim, Baek Hie Nahm
STOC
2006
ACM
129views Algorithms» more  STOC 2006»
16 years 6 months ago
Optimal phylogenetic reconstruction
One of the major tasks of evolutionary biology is the reconstruction of phylogenetic trees from molecular data. The evolutionary model is given by a Markov chain on the true evolu...
Constantinos Daskalakis, Elchanan Mossel, Sé...
RECOMB
2002
Springer
16 years 6 months ago
String barcoding: uncovering optimal virus signatures
There are many critical situations when one needs to rapidly identify an unidentified pathogen from among a given set of previously sequenced pathogens. DNA or RNA hybridization c...
Sam Rash, Dan Gusfield
TIT
1998
90views more  TIT 1998»
15 years 5 months ago
Source Codes as Random Number Generators
—A random number generator generates fair coin flips by processing deterministically an arbitrary source of nonideal randomness. An optimal random number generator generates asy...
Karthik Visweswariah, Sanjeev R. Kulkarni, Sergio ...
ICIP
2010
IEEE
15 years 3 months ago
Anisotropic diffusion using power watersheds
Many computer vision applications such as image filtering, segmentation and stereo-vision can be formulated as optimization problems.Whereas in previous decades continuousdomain, ...
Camille Couprie, Leo J. Grady, Laurent Najman, Hug...