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ICIC
2009
Springer
15 years 4 months ago
A Method for Multiple Sequence Alignment Based on Particle Swarm Optimization
Sequence Alignment is a basic information disposal method in Bioinformatics. However, it is difficult to deal with multiple sequence alignment problem(MSA). In this paper, an impro...
Fasheng Xu, Yuehui Chen
EOR
2008
140views more  EOR 2008»
14 years 10 months ago
Combining two pheromone structures for solving the car sequencing problem with Ant Colony Optimization
The car sequencing problem involves scheduling cars along an assembly line while satisfying capacity constraints. In this paper, we describe an Ant Colony Optimization (ACO) algor...
Christine Solnon
WABI
2005
Springer
117views Bioinformatics» more  WABI 2005»
15 years 3 months ago
Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons
Multiple Sequence Alignment (MSA) is one of the most fundamental problems in computational molecular biology. The running time of the best known scheme for finding an optimal ali...
Pankaj K. Agarwal, Yonatan Bilu, Rachel Kolodny
IJCAI
2003
14 years 11 months ago
Comparing Best-First Search and Dynamic Programming for Optimal Multiple Sequence Alignment
Sequence alignment is an important problem in computational biology. We compare two different approaches to the problem of optimally aligning two or more character strings: bounde...
Heath Hohwald, Ignacio Thayer, Richard E. Korf
BMCBI
2004
120views more  BMCBI 2004»
14 years 9 months ago
Optimal cDNA microarray design using expressed sequence tags for organisms with limited genomic information
Background: Expression microarrays are increasingly used to characterize environmental responses and hostparasite interactions for many different organisms. Probe selection for cD...
Yian A. Chen, David J. Mckillen, Shuyuan Wu, Matth...