Oligo kernels for biological sequence classification have a high discriminative power. A new parameterization for the K-mer oligo kernel is presented, where all oligomers of lengt...
Britta Mersch, Tobias Glasmachers, Peter Meinicke,...
Background: Multiple genome alignment is an important problem in bioinformatics. An important subproblem used by many multiple alignment approaches is that of aligning two multipl...
Several variations of nearest neighbor (NN) query have been investigated by the database community. However, realworld applications often result in the formulation of new variatio...
Mehdi Sharifzadeh, Mohammad R. Kolahdouzan, Cyrus ...
The issues of compiler optimization phase ordering and selection present important challenges to compiler developers in several domains, and in particular to the speed, code size,...
Prasad A. Kulkarni, Michael R. Jantz, David B. Wha...
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...