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» The optimal sequence compression
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BMCBI
2005
122views more  BMCBI 2005»
14 years 9 months ago
ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequenc
Background: Currently available methods to predict splice sites are mainly based on the independent and progressive alignment of transcript data (mostly ESTs) to the genomic seque...
Paola Bonizzoni, Raffaella Rizzi, Graziano Pesole
RIAO
2007
14 years 11 months ago
Optimizations of Local Edition for Evaluating Similarity Between Monophonic Musical Sequences
Abstract: Melody is an important property for the perceptual description of Western musical pieces. In the monophonic context, retrieval systems based on melodic similarity general...
Pierre Hanna, Pascal Ferraro
AAAI
2000
14 years 11 months ago
Divide-and-Conquer Frontier Search Applied to Optimal Sequence Alignment
We present a new algorithm that reduces the space complexity of heuristic search. It is most effective for problem spaces that grow polynomially with problem size, but contain lar...
Richard E. Korf, Weixiong Zhang
PLDI
2004
ACM
15 years 3 months ago
Fast searches for effective optimization phase sequences
It has long been known that a fixed ordering of optimization phases will not produce the best code for every application. One approach for addressing this phase ordering problem ...
Prasad Kulkarni, Stephen Hines, Jason Hiser, David...
ISMB
1994
14 years 11 months ago
Optimally Parsing a Sequence into Different Classes Based on Multiple Types of Evidence
Weconsider the problem of parsing a sequence into different classes of subsequences.Twocommonexamplesare finding the exons and introns in genomicsequences and identifying the seco...
Gary D. Stormo, David Haussler