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CPM
2007
Springer
222views Combinatorics» more  CPM 2007»
15 years 4 months ago
Computing Exact p-Value for Structured Motif
Extracting motifs from a set of DNA sequences is important in computational biology. Occurrence probability is a common used statistics to evaluate the statistical significance of...
Jing Zhang, Xi Chen, Ming Li
IPCO
2008
188views Optimization» more  IPCO 2008»
14 years 11 months ago
Binary Positive Semidefinite Matrices and Associated Integer Polytopes
We consider the positive semidefinite (psd) matrices with binary entries. We give a characterisation of such matrices, along with a graphical representation. We then move on to co...
Adam N. Letchford, Michael M. Sørensen
EJC
2010
14 years 10 months ago
Bijections for a class of labeled plane trees
We consider plane trees whose vertices are given labels from the set {1, 2, . . . , k} in such a way that the sum of the labels along any edge is at most k + 1; it turns out that ...
Nancy S. S. Gu, Helmut Prodinger, Stephan Wagner
JCB
2008
144views more  JCB 2008»
14 years 10 months ago
Multi-Break Rearrangements and Breakpoint Re-Uses: From Circular to Linear Genomes
Multi-break rearrangements break a genome into multiple fragments and further glue them together in a new order. While 2-break rearrangements represent standard reversals, fusions...
Max A. Alekseyev
MP
2006
77views more  MP 2006»
14 years 10 months ago
Zigzag inequalities: a new class of facet-inducing inequalities for Arc Routing Problems
In this paper we introduce a new class of facet-inducing inequalities for the Windy Rural Postman Problem and the Windy General Routing Problem. These inequalities are called Zigz...
Angel Corberán, Isaac Plana, José M....