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ACTA
2000
82views more  ACTA 2000»
14 years 11 months ago
Semantics analysis through elementary meanings
Thesaurus is a collection of words classified according to some relatedness measures among them. In this paper, we lay the theoretical foundations of thesaurus construction through...
Youichi Kobuchi, Takashi Saito, Hidenobu Nunome
BMCBI
2002
137views more  BMCBI 2002»
14 years 11 months ago
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Background: Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite ...
Konrad Büssow, Steve Hoffmann, Volker Sievert
BMCBI
2002
120views more  BMCBI 2002»
14 years 11 months ago
tacg - a grep for DNA
Background: Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly ov...
Harry Mangalam
BMCBI
2002
136views more  BMCBI 2002»
14 years 11 months ago
Making sense of EST sequences by CLOBBing them
Background: Expressed sequence tags (ESTs) are single pass reads from randomly selected cDNA clones. They provide a highly cost-effective method to access and identify expressed g...
John Parkinson, David B. Guiliano, Mark L. Blaxter
BMCBI
2002
131views more  BMCBI 2002»
14 years 11 months ago
Efficient Boolean implementation of universal sequence maps (bUSM)
Background: Recently, Almeida and Vinga offered a new approach for the representation of arbitrary discrete sequences, referred to as Universal Sequence Maps (USM), and discussed ...
John Schwacke, Jonas S. Almeida
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