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BMCBI
2010
127views more  BMCBI 2010»
14 years 9 months ago
Computational prediction of type III secreted proteins from gram-negative bacteria
Background: Type III secretion system (T3SS) is a specialized protein delivery system in gramnegative bacteria that injects proteins (called effectors) directly into the eukaryoti...
Yang Yang, Jiayuan Zhao, Robyn L. Morgan, Wenbo Ma...
ALMOB
2007
74views more  ALMOB 2007»
14 years 9 months ago
Evaluating deterministic motif significance measures in protein databases
Background: Assessing the outcome of motif mining algorithms is an essential task, as the number of reported motifs can be very large. Significance measures play a central role in...
Pedro Gabriel Ferreira, Paulo J. Azevedo
COLING
2002
14 years 9 months ago
Learning Verb Argument Structure from Minimally Annotated Corpora
In this paper we investigate the task of automatically identifying the correct argument structure for a set of verbs. The argument structure of a verb allows us to predict the rel...
Anoop Sarkar, Woottiporn Tripasai
BIOINFORMATICS
2008
172views more  BIOINFORMATICS 2008»
14 years 9 months ago
Fitting a geometric graph to a protein-protein interaction network
Motivation: Finding a good network null model for protein-protein interaction (PPI) networks is a fundamental issue. Such a model would provide insights into the interplay between...
Desmond J. Higham, Marija Rasajski, Natasa Przulj
BMCBI
2007
181views more  BMCBI 2007»
14 years 9 months ago
Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D
Background: Macromolecular visualization as well as automated structural and functional annotation tools play an increasingly important role in the post-genomic era, contributing ...
Aleksey A. Porollo, Jaroslaw Meller