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RECOMB
2006
Springer
15 years 10 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
STOC
2007
ACM
239views Algorithms» more  STOC 2007»
15 years 10 months ago
Approximating minimum bounded degree spanning trees to within one of optimal
In the MINIMUM BOUNDED DEGREE SPANNING TREE problem, we are given an undirected graph with a degree upper bound Bv on each vertex v, and the task is to find a spanning tree of min...
Mohit Singh, Lap Chi Lau
98
Voted
INFOCOM
2008
IEEE
15 years 4 months ago
Feasible Rate Allocation in Wireless Networks
—Rate allocation is a fundamental problem in the operation of a wireless network because of the necessity to schedule the operation of mutually interfering links between the node...
Ramakrishna Gummadi, Kyomin Jung, Devavrat Shah, R...
PODC
2006
ACM
15 years 3 months ago
Optimal-stretch name-independent compact routing in doubling metrics
We consider the problem of name-independent routing in doubling metrics. A doubling metric is a metric space whose doubling dimension is a constant, where the doubling dimension o...
Goran Konjevod, Andréa W. Richa, Donglin Xi...
CPM
2004
Springer
168views Combinatorics» more  CPM 2004»
15 years 3 months ago
The Protein Sequence Design Problem in Canonical Model on 2D and 3D Lattices
In this paper we investigate the protein sequence design (PSD) problem (also known as the inverse protein folding problem) under the Canonical model 4 on 2D and 3D lattices [12, 25...
Piotr Berman, Bhaskar DasGupta, Dhruv Mubayi, Robe...