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    BMCBI
    2008
    157views more  BMCBI 2008»
    Dimension reduction with redundant gene elimination for tumor classification
    14 years 10 months ago
    Dimension reduction with redundant gene elimination for tumor classification
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    Background: Analysis of gene expression data for tumor classification is an important application of bioinformatics methods. But it is hard to analyse gene expression data from DN...
    Xue-Qiang Zeng, Guo-Zheng Li, Jack Y. Yang, Mary Q...
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    BMCBI
    2006
    131views more  BMCBI 2006»
    The statistics of identifying differentially expressed genes in Expresso and TM4: a comparison
    14 years 9 months ago
    The statistics of identifying differentially expressed genes in Expresso and TM4: a comparison
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    Background: Analysis of DNA microarray data takes as input spot intensity measurements from scanner software and returns differential expression of genes between two conditions, t...
    Allan A. Sioson, Shrinivasrao P. Mane, Pinghua Li,...
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    BMCBI
    2006
    103views more  BMCBI 2006»
    Probe-level linear model fitting and mixture modeling results in high accuracy detection of differential gene expression
    14 years 9 months ago
    Probe-level linear model fitting and mixture modeling results in high accuracy detection of differential gene expression
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    Background: The identification of differentially expressed genes (DEGs) from Affymetrix GeneChips arrays is currently done by first computing expression levels from the low-level ...
    Sébastien Lemieux
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    BMCBI
    2006
    128views more  BMCBI 2006»
    Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments
    14 years 9 months ago
    Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments
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    Background: High density oligonucleotide tiling arrays are an effective and powerful platform for conducting unbiased genome-wide studies. The ab initio probe selection method emp...
    Srinka Ghosh, Heather A. Hirsch, Edward A. Sekinge...
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    BMCBI
    2007
    136views more  BMCBI 2007»
    Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees
    14 years 9 months ago
    Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees
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    Background: In vertebrates, a large part of gene transcriptional regulation is operated by cisregulatory modules. These modules are believed to be regulating much of the tissue-sp...
    Xiaoyu Chen, Mathieu Blanchette
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