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103
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KELSI
2004
Springer
15 years 6 months ago
A Randomized Algorithm for Distance Matrix Calculations in Multiple Sequence Alignment
Multiple sequence alignment (MSA) is a vital problem in biology. Optimal alignment of multiple sequences becomes impractical even for a modest number of sequences [1] since the gen...
Sanguthevar Rajasekaran, Vishal Thapar, Hardik Dav...
102
Voted
WABI
2001
Springer
138views Bioinformatics» more  WABI 2001»
15 years 5 months ago
Algorithms for Finding Gene Clusters
Abstract. Comparing gene orders in completely sequenced genomes is a standard approach to locate clusters of functionally associated genes. Often, gene orders are modeled as permut...
Steffen Heber, Jens Stoye
111
Voted
ICPP
1996
IEEE
15 years 5 months ago
On the Scalability of 2-D Wavelet Transform Algorithms on Fine-grained Parallel Machines
: We study the scalability of 2-D discrete wavelet transform algorithms on fine-grained parallel architectures. The principal operation in the 2-D DWT is the filtering operation us...
Jamshed N. Patel, Ashfaq A. Khokhar, Leah H. Jamie...
112
Voted
GIS
1995
ACM
15 years 4 months ago
A Window Retrieval Algorithm for Spatial Databases Using Quadtrees
An algorithm is presented to answer window queries in a quadtree-based spatial database environment by retrieving the covering blocks in the underlying spatial database. It works ...
Walid G. Aref, Hanan Samet
147
Voted
COCOA
2008
Springer
15 years 2 months ago
Algorithms and Experimental Study for the Traveling Salesman Problem of Second Order
We introduce a new combinatorial optimization problem, which is a generalization of the Traveling Salesman Problem (TSP) and which we call Traveling Salesman Problem of Second Orde...
Gerold Jäger, Paul Molitor