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KELSI
2004
Springer
15 years 12 months ago
A Randomized Algorithm for Distance Matrix Calculations in Multiple Sequence Alignment
Multiple sequence alignment (MSA) is a vital problem in biology. Optimal alignment of multiple sequences becomes impractical even for a modest number of sequences [1] since the gen...
Sanguthevar Rajasekaran, Vishal Thapar, Hardik Dav...
WABI
2001
Springer
138views Bioinformatics» more  WABI 2001»
15 years 11 months ago
Algorithms for Finding Gene Clusters
Abstract. Comparing gene orders in completely sequenced genomes is a standard approach to locate clusters of functionally associated genes. Often, gene orders are modeled as permut...
Steffen Heber, Jens Stoye
ICPP
1996
IEEE
15 years 10 months ago
On the Scalability of 2-D Wavelet Transform Algorithms on Fine-grained Parallel Machines
: We study the scalability of 2-D discrete wavelet transform algorithms on fine-grained parallel architectures. The principal operation in the 2-D DWT is the filtering operation us...
Jamshed N. Patel, Ashfaq A. Khokhar, Leah H. Jamie...
GIS
1995
ACM
15 years 10 months ago
A Window Retrieval Algorithm for Spatial Databases Using Quadtrees
An algorithm is presented to answer window queries in a quadtree-based spatial database environment by retrieving the covering blocks in the underlying spatial database. It works ...
Walid G. Aref, Hanan Samet
COCOA
2008
Springer
15 years 8 months ago
Algorithms and Experimental Study for the Traveling Salesman Problem of Second Order
We introduce a new combinatorial optimization problem, which is a generalization of the Traveling Salesman Problem (TSP) and which we call Traveling Salesman Problem of Second Orde...
Gerold Jäger, Paul Molitor