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» Time Series Prediction Based on Gene Expression Programming
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BIBE
2003
IEEE
121views Bioinformatics» more  BIBE 2003»
15 years 2 months ago
Time Series Analysis of Gene Expression and Location Data
We develop a method for integrating time series expression profiles and factor-gene binding data to quantify dynamic aspects of gene regulation. We estimate latencies for transcr...
Chen-Hsiang Yeang, Tommi Jaakkola
GCB
2009
Springer
141views Biometrics» more  GCB 2009»
15 years 4 months ago
Discovering Temporal Patterns of Differential Gene Expression in Microarray Time Series
: A wealth of time series of microarray measurements have become available over recent years. Several two-sample tests for detecting differential gene expression in these time seri...
Oliver Stegle, Katherine J. Denby, David L. Wild, ...
BMCBI
2011
14 years 1 months ago
A Simple Approach to Ranking Differentially Expressed Gene Expression Time Courses through Gaussian Process Regression
Background: The analysis of gene expression from time series underpins many biological studies. Two basic forms of analysis recur for data of this type: removing inactive (quiet) ...
Alfredo A. Kalaitzis, Neil D. Lawrence
JDCTA
2010
159views more  JDCTA 2010»
14 years 4 months ago
QSPR Study Of Mineral Crystal Lattice Energy Based On Gene Expression Programming
In this study, gene expression programming (GEP), a novel genetic algorithm, is used to develop quantitative model as potential screening mechanism for mineral crystal lattice ene...
Yuntao Zhang, Wenbin Dai, Zhengjun Cheng
BMCBI
2005
127views more  BMCBI 2005»
14 years 9 months ago
Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification
Background: Gene expression programs depend on recognition of cis elements in promoter region of target genes by transcription factors (TFs), but how TFs regulate gene expression ...
Li-Hsieh Lin, Hsiao-Ching Lee, Wen-Hsiung Li, Bor-...