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97
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RECOMB
1997
Springer
15 years 4 months ago
A branch-and-cut algorithm for multiple sequence alignment
Multiple sequence alignment is an important problem in computational biology. We study the Maximum Trace formulation introduced by Kececioglu [?]. We first phrase the problem in ...
Knut Reinert, Hans-Peter Lenhof, Petra Mutzel, Kur...
BIBM
2007
IEEE
132views Bioinformatics» more  BIBM 2007»
15 years 7 months ago
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
Feng Yue, Jijun Tang
112
Voted
JPDC
2007
167views more  JPDC 2007»
15 years 19 days ago
On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures
In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...
Diana H. P. Low, Bharadwaj Veeravalli, David A. Ba...
DAM
1999
114views more  DAM 1999»
15 years 12 days ago
Perfect and Almost Perfect Sequences
The autocorrelation function of a sequence is a measure for how much the given sequence di ers from its translates. Periodic binary sequences with good correlation properties have...
Dieter Jungnickel, Alexander Pott
114
Voted
PRL
2007
108views more  PRL 2007»
15 years 7 days ago
Towards a measure of deformability of shape sequences
In this paper we develop a theory for characterizing how deformable a shape is given a sequence of its observations. We define a term called ‘‘deformability index’’ (DI) ...
Amit K. Roy Chowdhury