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98
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JFP
2006
67views more  JFP 2006»
15 years 21 days ago
Finger trees: a simple general-purpose data structure
We introduce 2-3 finger trees, a functional representation of persistent sequences supporting access to the ends in amortized constant time, and concatenation and splitting in tim...
Ralf Hinze, Ross Paterson
130
Voted
SYRCODIS
2007
99views Database» more  SYRCODIS 2007»
15 years 1 months ago
Association Rules Discovery in Multivariate Time Series
A problem of association rules discovery in a multivariate time series is considered in this paper. A method for finding interpretable association rules between frequent qualitati...
Elena Lutsiv
103
Voted
BMCBI
2008
122views more  BMCBI 2008»
15 years 26 days ago
Grammar-based distance in progressive multiple sequence alignment
Background: We propose a multiple sequence alignment (MSA) algorithm and compare the alignment-quality and execution-time of the proposed algorithm with that of existing algorithm...
David J. Russell, Hasan H. Otu, Khalid Sayood
BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
15 years 7 months ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
BMCBI
2007
114views more  BMCBI 2007»
15 years 26 days ago
False occurrences of functional motifs in protein sequences highlight evolutionary constraints
Background: False occurrences of functional motifs in protein sequences can be considered as random events due solely to the sequence composition of a proteome. Here we use a nume...
Allegra Via, Pier Federico Gherardini, Enrico Ferr...