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107
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BMCBI
2007
233views more  BMCBI 2007»
15 years 28 days ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong
89
Voted
JCT
1998
100views more  JCT 1998»
15 years 15 days ago
2-Partition-Transitive Tournaments
Given a tournament score sequence s1 ≥ s2 ≥ · · · ≥ sn, we prove that there exists a tournament T on vertex set {1, 2, . . . , n} such that the degree of any vertex i is ...
Barry Guiduli, András Gyárfás...
100
Voted
RECOMB
2000
Springer
15 years 4 months ago
Sequencing-by-hybridization at the information-theory bound: an optimal algorithm
In a recent paper (Preparata et al., 1999) we introduced a novel probing scheme for DNA sequencing by hybridization (SBH). The new gapped-probe scheme combines natural and univers...
Franco P. Preparata, Eli Upfal
102
Voted
ICPR
2002
IEEE
16 years 1 months ago
Tracking People
This paper describes a real-time computer vision system for tracking people in monocular video sequences. The system tracks people as they move through the camera's field of ...
Ng Kim Piau, Surendra Ranganath
BMCBI
2008
116views more  BMCBI 2008»
15 years 28 days ago
GBParsy: A GenBank flatfile parser library with high speed
Background: GenBank flatfile (GBF) format is one of the most popular sequence file formats because of its detailed sequence features and ease of readability. To use the data in th...
Tae-Ho Lee, Yeon-Ki Kim, Baek Hie Nahm