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136
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TCBB
2010
114views more  TCBB 2010»
15 years 1 months ago
Cache-Oblivious Dynamic Programming for Bioinformatics
— We present efficient cache-oblivious algorithms for some well-studied string problems in bioinformatics including the longest common subsequence, global pairwise sequence alig...
Rezaul Alam Chowdhury, Hai-son Le, Vijaya Ramachan...
BMCBI
2008
86views more  BMCBI 2008»
15 years 3 months ago
Subfamily specific conservation profiles for proteins based on n-gram patterns
Background: A new algorithm has been developed for generating conservation profiles that reflect the evolutionary history of the subfamily associated with a query sequence. It is ...
John K. Vries, Xiong Liu
BMCBI
2011
14 years 7 months ago
Efficient alignment of pyrosequencing reads for re-sequencing applications
Background: Over the past few years, new massively parallel DNA sequencing technologies have emerged. These platforms generate massive amounts of data per run, greatly reducing th...
Francisco Fernandes, Paulo G. S. da Fonseca, Lu&ia...
141
Voted
ECCV
2004
Springer
15 years 9 months ago
Probabilistic Spatial-Temporal Segmentation of Multiple Sclerosis Lesions
Abstract. In this paper we describe the application of a novel statistical videomodeling scheme to sequences of multiple sclerosis (MS) images taken over time. The analysis of the ...
Allon Shahar, Hayit Greenspan
101
Voted
ECAI
2008
Springer
15 years 5 months ago
SLIDE: A Useful Special Case of the CARDPATH Constraint
We study the CARDPATH constraint. This ensures a given constraint holds a number of times down a sequence of variables. We show that SLIDE, a special case of CARDPATH where the sli...
Christian Bessiere, Emmanuel Hebrard, Brahim Hnich...